About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8584674_8594542_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8584674 - 8594542
Intron Length:
9869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGTTTTCTATCT
Flanking Amino Acid:
SSISDILRDELQAGMSASIT
Intron Amino Acid Position:
1583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.8
0.72
0.7
74.7
35.2
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
53
0.17
1.9
76.81
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034108
8488025 - 8693441
205417