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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8594679_8657573_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8594679 - 8657573
Intron Length:
62895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCGAT
U12 Branch Point Sequence:
TAGTCTATACCG
Flanking Amino Acid:
VGWKRRISAPVIADGALDKT
Intron Amino Acid Position:
1669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
0.9
71.2
33.6
Major BPS
60.9
0.27
1.3
58.4
40.3
Major PPT
88.6
0.87
0.8
84.2
30.7
Minor 5ss
36.8
-1.5
2.5
39.8
40.9
Minor BPS
48.5
-0.2
2
57.15
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025742
8488025 - 8694625
206601
ENSAPLT00000036066
8486306 - 8693441
207136
ENSAPLT00000018945
8486306 - 8693441
207136
ENSAPLT00000034108
8488025 - 8693441
205417
ENSAPLT00000031919
8570689 - 8693441
122753
ENSAPLT00000031390
8488025 - 8693441
205417
ENSAPLT00000046893
8533295 - 8693441
160147