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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8601570_8657573_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8601570 - 8657573
Intron Length:
56004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCGAT
U12 Branch Point Sequence:
TAGTCTATACCG
Flanking Amino Acid:
WSLESLHSATVIADGALDKT
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
60.9
0.27
1.3
58.4
40.3
Major PPT
88.6
0.87
0.8
84.2
30.7
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
48.5
-0.2
2
57.15
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007618
8601215 - 8693441
92227