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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8657714_8682413_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8657714 - 8682413
Intron Length:
24700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCACTC
5'SS Class:
major
3'SS Sequence:
TCTCTGTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TCTGTGAGAATC
Flanking Amino Acid:
GGGEQLAINELISDGSVVYA
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
62.5
42.3
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
77.6
0.62
0.8
71.8
32.8
Minor 5ss
48.2
-0.2
2.9
68.4
42.5
Minor BPS
39.4
-0.8
2.2
50.95
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025742
8488025 - 8694625
206601
ENSAPLT00000036066
8486306 - 8693441
207136
ENSAPLT00000018945
8486306 - 8693441
207136
ENSAPLT00000034108
8488025 - 8693441
205417
ENSAPLT00000007618
8601215 - 8693441
92227
ENSAPLT00000031919
8570689 - 8693441
122753
ENSAPLT00000031390
8488025 - 8693441
205417
ENSAPLT00000046893
8533295 - 8693441
160147