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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8687462_8688857_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8687462 - 8688857
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTGTTATGACA
Flanking Amino Acid:
ELLKYTNPQHRDYKDVEAAL
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.8
0.49
0.9
65.5
34.8
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
53.3
0.1
1.7
70.26
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031390
8488025 - 8693441
205417
ENSAPLT00000046893
8533295 - 8693441
160147
ENSAPLT00000025742
8488025 - 8694625
206601
ENSAPLT00000036066
8486306 - 8693441
207136
ENSAPLT00000018945
8486306 - 8693441
207136
ENSAPLT00000034108
8488025 - 8693441
205417
ENSAPLT00000007618
8601215 - 8693441
92227
ENSAPLT00000031919
8570689 - 8693441
122753