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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8689996_8690431_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8689996 - 8690431
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTG
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTTGTATGACT
Flanking Amino Acid:
FDHQLVCCKKDLLRRDILYY
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.1
40.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.2
0.73
0.8
76
32
Minor 5ss
46.8
-0.3
2.9
64.1
47.4
Minor BPS
52.3
0.15
2
78.16
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031390
8488025 - 8693441
205417
ENSAPLT00000046893
8533295 - 8693441
160147
ENSAPLT00000025742
8488025 - 8694625
206601
ENSAPLT00000036066
8486306 - 8693441
207136
ENSAPLT00000034108
8488025 - 8693441
205417
ENSAPLT00000018945
8486306 - 8693441
207136
ENSAPLT00000031919
8570689 - 8693441
122753
ENSAPLT00000007618
8601215 - 8693441
92227