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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8691383_8693283_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8691383 - 8693283
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
CTTCACTTATTT
Flanking Amino Acid:
SKQHHTGKPKAVTRPYYDFL
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
71.3
0.53
1
61.3
37
Major PPT
71.9
0.49
0.9
70.4
35
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
55.1
0.24
1.8
74.33
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018945
8486306 - 8693441
207136
ENSAPLT00000034108
8488025 - 8693441
205417
ENSAPLT00000007618
8601215 - 8693441
92227
ENSAPLT00000031919
8570689 - 8693441
122753
ENSAPLT00000031390
8488025 - 8693441
205417
ENSAPLT00000046893
8533295 - 8693441
160147
ENSAPLT00000025742
8488025 - 8694625
206601
ENSAPLT00000036066
8486306 - 8693441
207136