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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8784444_8784555_R

Intron Information:

Intron Rank:
137413
Intron Class:
major
Intron Phase:
Intron Coordinates:
8784444 - 8784555
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
CTGCTGTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
83.6
0.76
0.7
77.7
24.2
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
53.7
0.19
2.1
72.43
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021423
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044291
8784134 - 8786707
2574
ENSAPLT00000040391
8783718 - 8786707
2990
ENSAPLT00000027521
8784134 - 8786707
2574