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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8786050_8786238_R

Intron Information:

Intron Rank:
137415
Intron Class:
major
Intron Phase:
Intron Coordinates:
8786050 - 8786238
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
GTTTCGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAC
U12 Branch Point Sequence:
GCAGCCCCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
42.9
-0.4
1.3
46
38.7
Major PPT
74.7
0.56
0.9
65.7
40.9
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
39.4
-0.8
2
44.87
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021423
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027521
8784134 - 8786707
2574