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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8790299_8790385_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8790299 - 8790385
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
CTCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTCTTCCACA
Flanking Amino Acid:
HAWFHRACIQGQAYRAGLGQ
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
80.4
0.68
0.7
75.4
26.8
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
49.2
-0
2
62.68
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007821
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008116
8789333 - 8791468
2136