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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8800165_8800525_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8800165 - 8800525
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTTTCCAGAAAC
Flanking Amino Acid:
AHFPSGNNEKENLISWIPEN
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.6
1.12
0.8
80.1
34.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
78.6
0.64
0.8
76.7
32
Minor 5ss
30.2
-2.3
3.8
41.6
45
Minor BPS
53.9
0.1
1.9
69.94
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007910
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008292
8799938 - 8816375
16438