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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8801277_8801736_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8801277 - 8801736
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTGT
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCC
Flanking Amino Acid:
FAGLGQKMGKYVRVSSDTPP
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
67.7
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
83.7
24.3
Minor 5ss
40.2
-1.1
3.1
56.5
47.6
Minor BPS
64.1
0.42
1.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007910
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008292
8799938 - 8816375
16438