Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8806544_8807230_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8806544 - 8807230

Intron Length:

687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCGCAG

5'SS Class:

major

3'SS Sequence:

TCTTCTGCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAG

U12 Branch Point Sequence:

AGTCCCACACCC

Flanking Amino Acid:

QELAEIIWAQSQDCMVAALA

Intron Amino Acid Position:

653

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.6

0.37

1.2

53.1

45.4

Major BPS

53.2

0.08

1.7

65.3

43.7

Major PPT

81.3

0.7

0.8

73.1

37.3

Minor 5ss

41.7

-0.9

3.2

55.3

48.9

Minor BPS

44.2

-0.4

56.95

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007910

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008292

8799938 - 8816375

16438