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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8808012_8808360_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8808012 - 8808360
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGGGTTCC
5'SS Class:
major
3'SS Sequence:
CTTCTCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GCTCCTGTAACC
Flanking Amino Acid:
MNFVAHGGVQAFLTKVWWGK
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
65.6
35.1
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
81.7
0.71
0.7
75.9
26.2
Minor 5ss
36.3
-1.5
3.1
44.2
37.7
Minor BPS
52
0.04
2
64.16
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007910
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008292
8799938 - 8816375
16438