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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8808474_8808921_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8808474 - 8808921
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTGT
5'SS Class:
major
3'SS Sequence:
TTGCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAG
U12 Branch Point Sequence:
TTGTCCTTGCTC
Flanking Amino Acid:
PLLYTSLITFREKKLQPMNC
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
72.3
40
Major BPS
49.8
-0
1.5
59.3
39.1
Major PPT
74.7
0.56
0.8
66.3
35.8
Minor 5ss
40.2
-1.1
3.2
58.8
45.7
Minor BPS
47.7
-0.2
3.5
73.12
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007910
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008292
8799938 - 8816375
16438