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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8809136_8809704_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8809136 - 8809704
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CTCTTCTCAACA
Flanking Amino Acid:
FSLVCEETRQLLYDPDGLGV
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.5
41.1
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.2
0.61
0.8
73.2
30.3
Minor 5ss
37
-1.5
3.6
55.4
48.8
Minor BPS
64.3
0.45
1.6
70.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007910
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008292
8799938 - 8816375
16438