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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8810612_8810963_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8810612 - 8810963
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TACTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTGTAC
U12 Branch Point Sequence:
TAGTGCTGTACT
Flanking Amino Acid:
IFGQIPSYIDGVNFNIDQCS
Intron Amino Acid Position:
995

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.2
35.6
Major BPS
42.6
-0.4
1.4
37
42
Major PPT
82.7
0.74
0.8
77
31.2
Minor 5ss
29.7
-2.3
3.5
37.5
41.8
Minor BPS
47.8
-0
2.2
69.89
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007910
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008292
8799938 - 8816375
16438