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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8811877_8812118_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8811877 - 8812118
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGACA
5'SS Class:
major
3'SS Sequence:
ACTGTCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAG
U12 Branch Point Sequence:
CTTCTCTGCACT
Flanking Amino Acid:
TEQKIRDIAQRVDVLAELLD
Intron Amino Acid Position:
1161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
65.3
40.2
Major BPS
58
0.2
1.5
65.8
39.5
Major PPT
73.3
0.53
0.9
62.9
39
Minor 5ss
31.5
-2.1
3.2
41.3
44.7
Minor BPS
50.7
0.1
2
73.74
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007910
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008292
8799938 - 8816375
16438