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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8815945_8816249_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8815945 - 8816249
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
GCTCCCCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
ATGCACATGATG
Flanking Amino Acid:
NDVQMKRLNSFLQGCDPELC
Intron Amino Acid Position:
1468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
72.9
36.6
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
75.7
0.58
0.8
65.5
36.1
Minor 5ss
35.2
-1.7
2.9
46.3
41.5
Minor BPS
44.2
-0.6
1.8
48.28
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007910
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008292
8799938 - 8816375
16438