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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8819843_8820215_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8819843 - 8820215
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
CTTCATCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TGCATCTCACCC
Flanking Amino Acid:
FVKFQDLLTYSALDWEFFSM
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
74.7
0.55
0.8
65.8
35.7
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
46.4
-0.2
1.8
55.56
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008783
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009142
8819213 - 8825212
6000