Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8821380_8821968_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8821380 - 8821968

Intron Length:

589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGACTG

5'SS Class:

strong_major

3'SS Sequence:

TGTTATTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

GGCTTGTTATTT

Flanking Amino Acid:

SWKYFTIGKKIFLAVANFEQ

Intron Amino Acid Position:

328

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

71.5

40.2

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

87.2

0.84

0.8

84.8

35.4

Minor 5ss

30.1

-2.3

3.1

38.3

46.6

Minor BPS

-0.3

2.2

60.37

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009142

8819213 - 8825212

6000