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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8822202_8823232_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8822202 - 8823232
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCGTA
5'SS Class:
major
3'SS Sequence:
GATGGTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GAGTTCTGAGTT
Flanking Amino Acid:
DGSTWISMLEAKQRLDYVEE
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
65.4
40.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.3
0.41
1
58.4
47
Minor 5ss
38.9
-1.2
3.6
55.9
48.2
Minor BPS
48.6
-0
1.7
62.54
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008783
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009142
8819213 - 8825212
6000