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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8824560_8824701_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8824560 - 8824701
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGTAGGTC
5'SS Class:
weak_major
3'SS Sequence:
CAGGGTGCTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATGTTATCATCC
Flanking Amino Acid:
LTVDCSSPKDTPFPASLSVK
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.1
0.05
1.3
53.3
38.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
44.9
-0.2
1.7
42.5
42.9
Minor 5ss
35.2
-1.7
3.7
47.3
42.8
Minor BPS
45.3
-0.3
2
57.87
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008783
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009142
8819213 - 8825212
6000