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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8846748_8846836_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8846748 - 8846836
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
TGTCTCTTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
76.1
0.59
1
72.3
37.9
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
71.6
0.67
1.2
76.56
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026913
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035615
8834410 - 8851405
16996