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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8895022_8895336_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8895022 - 8895336
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCGC
5'SS Class:
major
3'SS Sequence:
TTGCCCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCATCCTCACCG
Flanking Amino Acid:
SYGDKCLYNCCAYDRKPPAG
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
59.8
45.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
76.8
0.6
0.8
70.2
30.7
Minor 5ss
33.3
-1.9
3.2
41
40.5
Minor BPS
48.2
-0.2
2
52.09
48.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010344
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034528
8888752 - 8899519
10768
ENSAPLT00000033414
8888752 - 8900215
11464
ENSAPLT00000010810
8888752 - 8899519
10768