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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8895607_8896590_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8895607 - 8896590
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
TGTCCCTTTTCC
Flanking Amino Acid:
MSENQFPAEHRFQRQMSEPC
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
80.5
0.69
0.7
72.9
32
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
43.8
-0.5
3.6
69.39
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010344
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034528
8888752 - 8899519
10768
ENSAPLT00000033414
8888752 - 8900215
11464
ENSAPLT00000010810
8888752 - 8899519
10768