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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8951427_8956316_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8951427 - 8956316
Intron Length:
4890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTCTCTCTGACT
Flanking Amino Acid:
MAHLREFASQHSRVDPEELF
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.9
0.45
0.8
61.4
35
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
65.8
0.58
1.7
83.75
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011277
8951397 - 8967291
15895
ENSAPLT00000042012
8951397 - 8975442
24046
ENSAPLT00000040326
8951397 - 8968444
17048
ENSAPLT00000030738
8951397 - 8969922
18526
ENSAPLT00000021655
8951397 - 8968680
17284