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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8956548_8958080_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8956548 - 8958080
Intron Length:
1533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CTGCTCTTATTC
Flanking Amino Acid:
ITRYYGSYLKGTKLWIIMEY
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
39.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82.2
0.72
0.8
76.3
32.3
Minor 5ss
29.9
-2.3
3.3
38.1
46.8
Minor BPS
51.3
0.02
1.6
58.7
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040326
8951397 - 8968444
17048
ENSAPLT00000030738
8951397 - 8969922
18526
ENSAPLT00000021655
8951397 - 8968680
17284
ENSAPLT00000011277
8951397 - 8967291
15895
ENSAPLT00000042012
8951397 - 8975442
24046