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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8958138_8959189_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8958138 - 8959189
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TCACCCCGAAAT
Flanking Amino Acid:
YLGGGSALDLLKPGPLEETY
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
71.6
0.54
1
72
33.1
Major PPT
82.5
0.73
0.8
80
32
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
47.3
-0.1
1.9
66.01
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030738
8951397 - 8969922
18526
ENSAPLT00000021655
8951397 - 8968680
17284
ENSAPLT00000011277
8951397 - 8967291
15895
ENSAPLT00000042012
8951397 - 8975442
24046
ENSAPLT00000040326
8951397 - 8968444
17048