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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8959299_8960362_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8959299 - 8960362
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TTTGTGTGAACA
Flanking Amino Acid:
SERKIHRDIKAANVLLSEQG
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
64.9
0.37
1
61
37.5
Major PPT
69.7
0.44
1.1
65.6
44.4
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
50
-0
2.2
71.44
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040326
8951397 - 8968444
17048
ENSAPLT00000030738
8951397 - 8969922
18526
ENSAPLT00000021655
8951397 - 8968680
17284
ENSAPLT00000011277
8951397 - 8967291
15895
ENSAPLT00000042012
8951397 - 8975442
24046