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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8960521_8960788_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8960521 - 8960788
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAG
U12 Branch Point Sequence:
TTTGCAGTCACT
Flanking Amino Acid:
VIKQSAYDFKADIWSLGITA
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
51.1
0.03
1.8
71.4
45.1
Major PPT
75.8
0.58
0.8
72.6
32.1
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
45.7
-0.2
2.6
76.66
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040326
8951397 - 8968444
17048
ENSAPLT00000030738
8951397 - 8969922
18526
ENSAPLT00000021655
8951397 - 8968680
17284
ENSAPLT00000011277
8951397 - 8967291
15895
ENSAPLT00000042012
8951397 - 8975442
24046