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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8960975_8961143_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8960975 - 8961143
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTATTTGCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
EACLNKDPRFRPTAKELLKH
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.5
0.71
0.9
73.8
41.5
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040326
8951397 - 8968444
17048
ENSAPLT00000030738
8951397 - 8969922
18526
ENSAPLT00000021655
8951397 - 8968680
17284
ENSAPLT00000011277
8951397 - 8967291
15895
ENSAPLT00000042012
8951397 - 8975442
24046