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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8961850_8961943_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8961850 - 8961943
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TTTGTCTTGACC
Flanking Amino Acid:
CLKPCGDTMISDGDTEDGDQ
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
73.9
0.74
1.3
81.07
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010774
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030738
8951397 - 8969922
18526
ENSAPLT00000021655
8951397 - 8968680
17284
ENSAPLT00000011277
8951397 - 8967291
15895