Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8964674_8966251_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8964674 - 8966251

Intron Length:

1578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCCTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTGAC

U12 Branch Point Sequence:

CAGCAGTGACCT

Flanking Amino Acid:

LIAHMVERVQRFSHSRNHLT

Intron Amino Acid Position:

432

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

51.2

0.03

1.2

44.4

38.7

Major PPT

0.79

0.7

80.7

24.6

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

35.9

-0.9

2.2

48.32

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010774

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011277

8951397 - 8967291

15895

ENSAPLT00000040326

8951397 - 8968444

17048