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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8973603_8975772_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8973603 - 8975772
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCCCGC
5'SS Class:
major
3'SS Sequence:
CATTCTGTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
SMTDHSVAVENQLSGYLLRK
Intron Amino Acid Position:
934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.3
49.1
47.6
Major BPS
100
1.24
0.5
100
0
Major PPT
64.1
0.32
1
58
42.8
Minor 5ss
42.7
-0.8
3.2
60.2
44.3
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027121
8970295 - 9038587
68293