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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8974668_8976659_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8974668 - 8976659
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCGAT
5'SS Class:
major
3'SS Sequence:
TTTCTCTGCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTCTCTCTCT
Flanking Amino Acid:
LDNSVCNRSNIFCSLAVSPE
Intron Amino Acid Position:
879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.4
39.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81
0.7
0.8
80.6
31.4
Minor 5ss
40.2
-1.1
3.5
61
44.7
Minor BPS
41.4
-0.5
3.7
80.25
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011805
8971295 - 9037830
66536