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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8976779_8978434_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8976779 - 8978434
Intron Length:
1656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTTT
5'SS Class:
major
3'SS Sequence:
GTTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
TCACCATTCACA
Flanking Amino Acid:
SAQKTIVVAASTRLEMGKWM
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
79.5
36.8
Major BPS
67.8
0.44
1
75
30.1
Major PPT
83.5
0.75
0.9
77.3
37
Minor 5ss
48.2
-0.2
3.2
73.2
43.7
Minor BPS
49.1
-0
2
63.03
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020501
8974528 - 9038587
64060
ENSAPLT00000011805
8971295 - 9037830
66536
ENSAPLT00000027121
8970295 - 9038587
68293