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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8978518_8979226_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8978518 - 8979226
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
HGHLPLHGMLVEESENEWAV
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
62
0.3
1
53
34.1
Major PPT
92.2
0.95
0.6
88.3
21.3
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020501
8974528 - 9038587
64060
ENSAPLT00000011805
8971295 - 9037830
66536
ENSAPLT00000027121
8970295 - 9038587
68293