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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8997127_8997853_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8997127 - 8997853
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
HASNTDVPKQSVAFTEGLRT
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
30.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
88.4
0.86
0.6
88.2
21.6
Minor 5ss
39.2
-1.2
2.7
51.6
44.8
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027121
8970295 - 9038587
68293
ENSAPLT00000020501
8974528 - 9038587
64060
ENSAPLT00000011805
8971295 - 9037830
66536