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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8999831_8999976_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8999831 - 8999976
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGGGTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCATAATG
Flanking Amino Acid:
FFTRGSSFRYSGRTQKQLVD
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.5
0.42
1
60.4
44.9
Minor 5ss
38.9
-1.2
2.8
49.3
46.5
Minor BPS
56.5
0.06
1.7
60.87
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020501
8974528 - 9038587
64060
ENSAPLT00000011805
8971295 - 9037830
66536
ENSAPLT00000027121
8970295 - 9038587
68293