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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9000141_9001530_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9000141 - 9001530
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTGTA
5'SS Class:
major
3'SS Sequence:
GTTCTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATGTGCTACTT
Flanking Amino Acid:
KRFLIKLHPEGPYQDTLEFL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.3
74.1
36.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.3
0.61
0.9
68.7
42
Minor 5ss
37.8
-1.4
3.1
49.5
46.8
Minor BPS
39.6
-0.7
2.4
60.62
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020501
8974528 - 9038587
64060
ENSAPLT00000011805
8971295 - 9037830
66536
ENSAPLT00000027121
8970295 - 9038587
68293