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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9002251_9009924_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9002251 - 9009924
Intron Length:
7674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TTCTTCATGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCATGACA
Flanking Amino Acid:
GKILEFHRKHVGQTPAESDF
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.3
40.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.5
0.6
1
73.1
36
Minor 5ss
34
-1.8
3.2
40.9
45.3
Minor BPS
63.2
0.41
1.6
74.85
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020501
8974528 - 9038587
64060
ENSAPLT00000011805
8971295 - 9037830
66536
ENSAPLT00000027121
8970295 - 9038587
68293