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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9010040_9012348_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9010040 - 9012348
Intron Length:
2309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTGTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCTGTAATA
Flanking Amino Acid:
AALLISHLLQSEIGDFDESE
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
85
31.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.5
0.6
0.9
73.8
35.6
Minor 5ss
40.5
-1.1
2.8
58
39.1
Minor BPS
68.2
0.57
2
82.68
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020501
8974528 - 9038587
64060
ENSAPLT00000011805
8971295 - 9037830
66536
ENSAPLT00000027121
8970295 - 9038587
68293