Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9014319_9018581_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9014319 - 9018581

Intron Length:

4263

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

ACTTTTCTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

TTTTTGTGAAAT

Flanking Amino Acid:

PMKPVIKQVRRPKTTMLRLA

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

75.5

40.6

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

82.2

0.72

0.7

31.1

Minor 5ss

38.7

-1.3

2.8

41.7

Minor BPS

53.8

0.2

2.2

81.8

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020501

8974528 - 9038587

64060

ENSAPLT00000011805

8971295 - 9037830

66536

ENSAPLT00000027121

8970295 - 9038587

68293