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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9020139_9037609_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9020139 - 9037609
Intron Length:
17471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTGTCTTAATC
Flanking Amino Acid:
DNTVEVLDIESKYYGQALLT
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
76.4
0.81
1.3
81.43
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011291
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020501
8974528 - 9038587
64060
ENSAPLT00000011805
8971295 - 9037830
66536
ENSAPLT00000027121
8970295 - 9038587
68293