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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9061688_9062305_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9061688 - 9062305
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATCTTTTGATT
Flanking Amino Acid:
NDFLKLRTMLITHMQDLQEV
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.7
73.8
31.3
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
64.2
0.53
1.1
76.43
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011787
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030793
9057581 - 9075477
17897
ENSAPLT00000018275
9058016 - 9075315
17300
ENSAPLT00000012287
9057051 - 9075315
18265