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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9068114_9069568_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9068114 - 9069568
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGCGTACA
5'SS Class:
major
3'SS Sequence:
ATTTGTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GATTTCTTAAAT
Flanking Amino Acid:
GYGDAINCRDCFKTIISYID
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
69.6
36.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
82
0.72
0.8
76.3
37.2
Minor 5ss
29.6
-2.3
2.7
31.3
37.1
Minor BPS
73.9
0.83
1.3
83.32
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011787
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030793
9057581 - 9075477
17897
ENSAPLT00000018275
9058016 - 9075315
17300
ENSAPLT00000012287
9057051 - 9075315
18265