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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9069693_9070580_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9069693 - 9070580
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACACA
5'SS Class:
major
3'SS Sequence:
TCTTGTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTGTTCTGAAAG
Flanking Amino Acid:
YPERIIPGAAEKIERTVQIE
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
66.7
38.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.5
0.64
0.8
77.1
31.6
Minor 5ss
39.2
-1.2
2.9
46.5
43.7
Minor BPS
52.4
-0
1.7
56.92
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011787
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030793
9057581 - 9075477
17897
ENSAPLT00000018275
9058016 - 9075315
17300
ENSAPLT00000012287
9057051 - 9075315
18265