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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9074046_9075282_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9074046 - 9075282
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTGTCTTATTT
Flanking Amino Acid:
MSKQQPAQFTNPE
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
60.7
0.41
1.7
77.4
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011787
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012287
9057051 - 9075315
18265
ENSAPLT00000030793
9057581 - 9075477
17897
ENSAPLT00000018275
9058016 - 9075315
17300