About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9092157_9093072_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9092157 - 9093072
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCACCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTGTTTCACCT
Flanking Amino Acid:
RSGLAQQQVKVTALNSEEEN
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.4
0.62
0.8
74.9
34.7
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
50.1
0.08
1.9
74.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011984
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047227
9091444 - 9111021
19578
ENSAPLT00000012601
9091444 - 9111657
20214